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The transcriptional events and their relationship to physiological changes during poplar seed germination and post-germination.

Identifieur interne : 000669 ( Main/Exploration ); précédent : 000668; suivant : 000670

The transcriptional events and their relationship to physiological changes during poplar seed germination and post-germination.

Auteurs : Chunpu Qu [République populaire de Chine] ; Hancheng Zhao [République populaire de Chine] ; Jinyuan Chen [République populaire de Chine] ; Zhuang Zuo [République populaire de Chine] ; Xue Sun [République populaire de Chine] ; Jiahuan Huang [République populaire de Chine] ; Chengjun Yang [République populaire de Chine] ; Xiuli Zhang [République populaire de Chine] ; Peng Zhang [République populaire de Chine] ; Xiankui Quan [République populaire de Chine] ; Zhiru Xu [République populaire de Chine] ; Guanjun Liu [République populaire de Chine]

Source :

RBID : pubmed:31684868

Descripteurs français

English descriptors

Abstract

BACKGROUND

Seed germination, the foundation of plant propagation, involves a series of changes at the molecular level. Poplar is a model woody plant, but the molecular events occurring during seed germination in this species are unclear.

RESULTS

In this study, we investigated changes in gene transcriptional levels during different germination periods in poplar by high-throughput sequencing technology. Analysis of genes expressed at specific germination stages indicated that these genes are distributed in many metabolic pathways. Enrichment analysis of significantly differentially expressed genes based on hypergeometric testing revealed that multiple pathways, such as pathways related to glycolysis, lipid, amino acid, protein and ATP synthesis metabolism, changed significantly at the transcriptional level during seed germination. A comparison of ΣZ values uncovered a series of transcriptional changes in biological processes related to primary metabolism during poplar seed germination. Among these changes, genes related to CHO metabolism were the first to be activated, with subsequent expression of genes involved in lipid metabolism and then those associated with protein metabolism. The pattern of metabolomic and physiological index changes further verified the sequence of some biological events.

CONCLUSIONS

Our study revealed molecular events occurring at the transcriptional level during seed germination and determined their order. These events were further verified by patterns of changes of metabolites and physiological indexes. Our findings lay a foundation for the elucidation of the molecular mechanisms responsible for poplar seed germination.


DOI: 10.1186/s12864-019-6180-5
PubMed: 31684868
PubMed Central: PMC6829952


Affiliations:


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Le document en format XML

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<name sortKey="Zhang, Peng" sort="Zhang, Peng" uniqKey="Zhang P" first="Peng" last="Zhang">Peng Zhang</name>
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<series>
<title level="j">BMC genomics</title>
<idno type="eISSN">1471-2164</idno>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Germination (genetics)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>Populus (metabolism)</term>
<term>Populus (physiology)</term>
<term>Seeds (growth & development)</term>
<term>Transcription, Genetic (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Germination (génétique)</term>
<term>Graines (croissance et développement)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (génétique)</term>
<term>Populus (métabolisme)</term>
<term>Populus (physiologie)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Transcription génétique (MeSH)</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr">
<term>Graines</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Germination</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en">
<term>Populus</term>
<term>Seeds</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Germination</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Gene Expression Regulation, Plant</term>
<term>Transcription, Genetic</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Régulation de l'expression des gènes végétaux</term>
<term>Transcription génétique</term>
</keywords>
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<front>
<div type="abstract" xml:lang="en">
<p>
<b>BACKGROUND</b>
</p>
<p>Seed germination, the foundation of plant propagation, involves a series of changes at the molecular level. Poplar is a model woody plant, but the molecular events occurring during seed germination in this species are unclear.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>RESULTS</b>
</p>
<p>In this study, we investigated changes in gene transcriptional levels during different germination periods in poplar by high-throughput sequencing technology. Analysis of genes expressed at specific germination stages indicated that these genes are distributed in many metabolic pathways. Enrichment analysis of significantly differentially expressed genes based on hypergeometric testing revealed that multiple pathways, such as pathways related to glycolysis, lipid, amino acid, protein and ATP synthesis metabolism, changed significantly at the transcriptional level during seed germination. A comparison of ΣZ values uncovered a series of transcriptional changes in biological processes related to primary metabolism during poplar seed germination. Among these changes, genes related to CHO metabolism were the first to be activated, with subsequent expression of genes involved in lipid metabolism and then those associated with protein metabolism. The pattern of metabolomic and physiological index changes further verified the sequence of some biological events.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>CONCLUSIONS</b>
</p>
<p>Our study revealed molecular events occurring at the transcriptional level during seed germination and determined their order. These events were further verified by patterns of changes of metabolites and physiological indexes. Our findings lay a foundation for the elucidation of the molecular mechanisms responsible for poplar seed germination.</p>
</div>
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<Issue>1</Issue>
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<Year>2019</Year>
<Month>Nov</Month>
<Day>04</Day>
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<Title>BMC genomics</Title>
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<ArticleTitle>The transcriptional events and their relationship to physiological changes during poplar seed germination and post-germination.</ArticleTitle>
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<AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Seed germination, the foundation of plant propagation, involves a series of changes at the molecular level. Poplar is a model woody plant, but the molecular events occurring during seed germination in this species are unclear.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">In this study, we investigated changes in gene transcriptional levels during different germination periods in poplar by high-throughput sequencing technology. Analysis of genes expressed at specific germination stages indicated that these genes are distributed in many metabolic pathways. Enrichment analysis of significantly differentially expressed genes based on hypergeometric testing revealed that multiple pathways, such as pathways related to glycolysis, lipid, amino acid, protein and ATP synthesis metabolism, changed significantly at the transcriptional level during seed germination. A comparison of ΣZ values uncovered a series of transcriptional changes in biological processes related to primary metabolism during poplar seed germination. Among these changes, genes related to CHO metabolism were the first to be activated, with subsequent expression of genes involved in lipid metabolism and then those associated with protein metabolism. The pattern of metabolomic and physiological index changes further verified the sequence of some biological events.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Our study revealed molecular events occurring at the transcriptional level during seed germination and determined their order. These events were further verified by patterns of changes of metabolites and physiological indexes. Our findings lay a foundation for the elucidation of the molecular mechanisms responsible for poplar seed germination.</AbstractText>
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<LastName>Qu</LastName>
<ForeName>Chunpu</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
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<LastName>Zhao</LastName>
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<Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
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<AffiliationInfo>
<Affiliation>School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
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<ForeName>Jinyuan</ForeName>
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<Affiliation>College of Life Science, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
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<AffiliationInfo>
<Affiliation>School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
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</AffiliationInfo>
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<AffiliationInfo>
<Affiliation>College of Life Science, Northeast Forestry University, Harbin, 150040, People's Republic of China.</Affiliation>
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<Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China. liuguanjun2003@126.com.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>School of Forestry, Northeast Forestry University, Harbin, 150040, People's Republic of China. liuguanjun2003@126.com.</Affiliation>
</AffiliationInfo>
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</AuthorList>
<Language>eng</Language>
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<Grant>
<GrantID>2572017CA01</GrantID>
<Agency>Fundamental Research Funds for Central Universities of the Central South University</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>31570648</GrantID>
<Agency>the National Natural Science Foundation of China</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>31600534</GrantID>
<Agency>National Natural Science Foundation of China</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>B16010</GrantID>
<Agency>the 111 project</Agency>
<Country></Country>
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<MeshHeading>
<DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D018525" MajorTopicYN="N">Germination</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
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<DescriptorName UI="D012639" MajorTopicYN="N">Seeds</DescriptorName>
<QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName>
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<Keyword MajorTopicYN="N">Metabolite changes</Keyword>
<Keyword MajorTopicYN="N">Physiological index</Keyword>
<Keyword MajorTopicYN="N">Poplar</Keyword>
<Keyword MajorTopicYN="N">RNA-Seq</Keyword>
<Keyword MajorTopicYN="N">Seed germination and post-germination</Keyword>
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